Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005759359 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 742887 |
Sequences flagged as poor quality | 0 |
Sequence length | 20-76 |
%GC | 58 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 625 | 0.0 | 40.224174 | 1 |
GTATCAA | 1555 | 0.0 | 38.75716 | 1 |
TATCAAC | 1765 | 0.0 | 34.14353 | 2 |
CAACGCA | 2020 | 0.0 | 30.344759 | 5 |
GTGGTAT | 250 | 0.0 | 30.305883 | 1 |
ATCAACG | 2035 | 0.0 | 29.951868 | 3 |
AACGCAG | 2065 | 0.0 | 29.683495 | 6 |
AGAGTAC | 2040 | 0.0 | 29.20127 | 11 |
TCAACGC | 2115 | 0.0 | 28.656118 | 4 |
CAGAGTA | 2090 | 0.0 | 28.337921 | 10 |
TGGTATC | 280 | 0.0 | 28.28687 | 2 |
ACGCAGA | 2255 | 0.0 | 27.180616 | 7 |
CGCAGAG | 2250 | 0.0 | 27.087978 | 8 |
GCAGAGT | 2285 | 0.0 | 26.522366 | 9 |
TATACTG | 70 | 0.001347864 | 24.597277 | 5 |
AGTACGG | 2450 | 0.0 | 21.08338 | 13 |
GTTTAGA | 100 | 4.385286E-4 | 20.663103 | 1 |
GAGTACG | 2505 | 0.0 | 20.620472 | 12 |
AATACTT | 85 | 0.004163218 | 20.25658 | 15 |
GTGTATA | 120 | 6.471385E-5 | 20.089128 | 1 |