EGAF00005760308 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005760308
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	942429
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATTAAACTGTTGACAGTAATAAGTTGCAAAATCTTCAGGCTGCAGGCTGCTGATTGTGAGAGTGAATTCTGTC	1922	0.20394109264464483	No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT	1870	0.19842343561159514	No Hit
GTTTAATACTTACCCGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAACGAACTGTGGCTGCACCAT	1503	0.15948151001295588	No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC	1244	0.13199933363680447	No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG	1192	0.12648167660375476	No Hit
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC	1050	0.11141422855196519	No Hit
GTCCTGCTCTGTGACACTCTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCT	1041	0.1104592494500912	No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC	1032	0.1095042703482172	No Hit
CAATAGGGGTAGGTCCCCTGTGGAAAAAGGGTCAGAGGCCAAAGGATGGGAGGGGGTCAGGCTGGAACTGAGGAG	960	0.10186443753322531	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCGAA	20	0.0071590925	52.11102	46
GTATCAA	2800	0.0	38.396732	1
GTGGTAT	375	0.0	36.755848	1
TCGTATG	85	2.8667273E-9	36.658722	40
TATCAAC	3205	0.0	33.53939	2
CGTATGC	95	8.44193E-9	32.82091	41
ATCAACG	3305	0.0	32.733074	3
TCAACGC	3325	0.0	32.6398	4
CAACGCA	3355	0.0	32.34794	5
AACGCAG	3435	0.0	31.494267	6
GCCTAAT	195	1.1150405E-9	31.202572	70
ACGCAGA	3775	0.0	28.473652	7
AGAGTAC	3835	0.0	28.118004	11
GGTATCA	1835	0.0	27.980011	1
CGCAGAG	3930	0.0	27.350647	8
CAGAGTA	3945	0.0	27.333982	10
GCAGAGT	4060	0.0	26.644596	9
AATCTCG	95	1.038273E-5	25.45946	36
TTAACGG	150	1.027729E-9	25.330133	35
GCTAATC	100	1.5572394E-5	24.162058	33