EGAF00005760339 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005760339
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2195782
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCTAGGACGGTCAGCTTGGTCCCTCCGCCGAACACCTGAATGCCAGTGCCCCAGGCCTGACAGTAATAGTCAG	3440	0.15666400398582372	No Hit
GCCTTGGGCTGACCTAGGACGGTCAGCTTGGTCCCTCCGCCGAACACCTG	3376	0.15374932484190143	No Hit
GCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGC	3072	0.13990459890827048	No Hit
CCTCTGGGGCTGAGCGCTACCTCACCATCTCCAGCCTCCAGTCTGAGGATGAGGCTGACTATTACTGTCAGGC	2642	0.12032159841004252	No Hit
TCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGG	2482	0.11303490055023678	No Hit
GTGTGGTGGTCTCCACTCCCGCCTTGACGGGGCTGCTATCTGCCTTCCAG	2425	0.11043901443768098	No Hit
GCCCCAGAGGTGGAGCCTGAGAAACGATGAGGGATCCCGTCCCCCTTGGT	2388	0.10875396555760089	No Hit
GGGTCTCTCTCCCAGCTTGTGTTGACTCAGTCGCCCTCTGCCTCTGCCTCCCTGGGAGCCTCGGTCAAGCTCAC	2209	0.1006019723269432	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTGGTAT	960	40.228527	1
GGTATCA	2570	37.83584	1
GTATCAA	5215	36.03542	1
TGGTATC	1160	32.97651	2
TATCAAC	5920	31.72594	2
ATCAACG	6115	30.630644	3
TCAACGC	6160	30.448898	4
CAACGCA	6275	29.946398	5
AACGCAG	6425	29.461527	6
CGCAGAG	7190	26.422619	8
ACGCAGA	7170	26.400324	7
AGAGTAC	7185	26.39491	11
CAGAGTA	7215	26.378767	10
GCAGAGT	8005	24.032356	9
AATAGCG	290	23.017317	62
AGTACGG	6775	21.797798	13
GAGTACG	6895	21.515343	12
ATAGCGG	355	18.826077	63
GGTCATT	1155	18.789608	70
AACGAAC	360	18.383602	51