EGAF00005760423 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005760423
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	530671
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	939	0.17694579127180496	No Hit
GTCTACTATAGTGGGAGTACCTACTACAATAGTGGGAGTACCTACTACAA	787	0.1483028090851017	No Hit
GTGTACACCTGTGGTTCTCGGGGCTGCCCTTTGGCTTTGGAGATGGTTTT	712	0.134169758664031	No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT	681	0.12832809782332177	No Hit
GTAATACACAGCCGTGTCTGTGGCGGTCACAGAGGTAAGGTTCAGGGAGA	661	0.12455928437770294	No Hit
GGTGTACACCCTGCCCCCATCCCGGGATGAGCTGACCAAGAACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTT	590	0.11117999664575604	No Hit
GTATAATAAGTGGCCTCCGCATTTTGGCCAGGGGACCAAGCTGGAGATCAAACGAACTGTGGCTGCACCAT	569	0.10722274252785624	No Hit
GTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCGTGCCCTCCAGCAGCTTGGGCACCCAGAC	549	0.10345392908223738	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	670	0.0	40.607944	1
GTATCAA	1495	0.0	38.70141	1
TATCAAC	1660	0.0	34.64058	2
TCAACGC	1750	0.0	32.8188	4
ATCAACG	1775	0.0	32.36572	3
CGAGGTA	45	0.0039955	31.590918	66
CAACGCA	1820	0.0	31.556541	5
AACGCAG	1845	0.0	31.31535	6
GTGGTAT	245	0.0	30.925396	1
GCACCGT	45	0.004692573	30.569744	6
CGCAGAG	2005	0.0	28.644842	8
ACGCAGA	2010	0.0	28.573586	7
AGAGTAC	2055	0.0	27.618387	11
TCGCGGT	60	0.007843683	27.517439	69
CAGAGTA	2125	0.0	27.02725	10
GCAGAGT	2165	0.0	26.369053	9
TTCGGGG	335	0.0	25.682877	70
ATAACGT	125	1.2951568E-7	24.773167	22
CGGGGAT	125	1.2963392E-7	24.77083	17
AGTACGG	1795	0.0	24.14756	13