FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005760606

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005760606
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1014420
Sequences flagged as poor quality0
Sequence length20-76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATAGGTCAGGAGCTTAGGGGCACTCCCTGGTTTCTGCTGAAACCAATT19210.1893692947694249No Hit
GACCTATACTGCATCCAATTTGCAAAGTGGAGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCA16590.16354172827822794No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC14240.14037578123459712No Hit
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC13650.1345596498491749No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT13520.13327812937442085No Hit
GGCTGGAACTGAGGAGCAGGTGGGGGCACTTCTCCCTCTAACACTCTCCC10620.10469036493759981No Hit
GTCTACGCCTGCGAAGTCACCCATCAGGGCCTGAGCTCGCCCGTCACAAA10240.10094438201139569No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)