FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005760621

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005760621
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences780550
Sequences flagged as poor quality0
Sequence length20-76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT18840.2413682659663058No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13670.17513291909550957No Hit
GTATTACTGTCAACAGTATGGTGACTCACCTACGACGTTCGGCCAAGGGA13250.16975209787970022No Hit
GTGTATTACTGTCAACAGTATGGTGACTCACCTACGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAACGAA12540.16065594772916533No Hit
GTTAGGACCCAGAGGGAACCATGGAAACCCCAGCGCAGCTTCTCTTCCTCCTGCTACTCTGGCTCCCAGATACCA11360.14553840240855806No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC11280.14451348408173723No Hit
GTCCTGCTCTGTGACACTCTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCT11210.143616680545769No Hit
GTCTGGGACAGACTTCACTCTCACCATCGGCAGACTGGAGCCTGAAGATC10620.13605790788546537No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC9820.12580872461725706No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG9750.12491192108128883No Hit
GTAATACACTGCAAGATCTTCAGGCTCCAGTCTGCCGATGGTGAGAGTGAAGTCTGTCCCAGACCCACTGCCA9360.11991544423803728No Hit
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC9120.11684068925757478No Hit
GGCTGGAACTGAGGAGCAGGTGGGGGCACTTCTCCCTCTAACACTCTCCC8730.11184421241432323No Hit
CTCCTGCAGGGCCAGTCAGAGTGTTACCAGAAACTACTTAGCCTGGTACC8690.11133175325091281No Hit
GTATGGTGACTCACCTACGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAACGAACTGTGGCTGCACCAT8680.1112036384600602No Hit
CTCTGGGATAGAAGTTATTCAGCAGGCACACAACAGAGGCAGTTCCAGAT8360.10710396515277688No Hit
CAGTAATACACTGCAAGATCTTCAGGCTCCAGTCTGCCGATGGTGAGAGTGAAGTCTGTCCCAGACCCACTGCCA8280.10607904682595605No Hit
GTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGC7840.10044199602844148No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)