EGAF00005760688 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005760688
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	393794
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGCGTAGTAATCTCGTATGCCGT	2270	0.5764435212319131	No Hit
ATACACATCTCCGAGCCCACGAGACGCGTAGTAATCTCGTATGCCGTCTT	438	0.11122566621126781	TruSeq Adapter, Index 12 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGGGGG	460	0.0	54.4584	70
AGTCACG	20	0.006398438	53.60604	55
CGAGGGT	35	0.007713545	51.124218	70
GATCCTA	20	0.0079387175	50.760666	15
TGTCGTA	35	2.3148315E-5	49.12323	38
TATACAC	515	0.0	44.69956	3
GCATCTA	40	5.094165E-5	42.982822	38
ATGTCGT	40	5.164398E-5	42.88322	37
AATGTCG	40	5.247347E-5	42.767605	36
AGCGGGG	50	3.296398E-6	42.322945	49
CAGCGGG	50	3.344714E-6	42.23352	48
GCCGTCT	525	0.0	41.36104	46
ATGCCGT	535	0.0	41.123676	44
TTATACA	580	0.0	40.85748	2
CGAGCCC	550	0.0	40.608532	15
CGTCTTC	530	0.0	40.506992	48
CGCGTAG	555	0.0	40.35543	28
ACGCGTA	555	0.0	40.329754	27
GACGCGT	555	0.0	40.314358	26
CGAGACG	555	0.0	40.293854	23