EGAF00005760805 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005760805
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1156527
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTGTGTACCTTGCATGCAGTAATAAACCCCAACATCCTCAGCCTCCACCC	2654	0.22948015913160694	No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT	2034	0.17587138043469802	No Hit
CCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAAAGCCTCGTA	1737	0.1501910461234368	No Hit
GGTACACACTGGCCGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAACGAACTGTGGCTGCACCAT	1527	0.1320332339841612	No Hit
AGGTACACACTGGCCGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAACGAACTGTGGCTGCACCAT	1308	0.1130972298960595	No Hit
GTCCTGCTCTGTGACACTCTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCT	1284	0.11102205136585656	No Hit
GTACACACTGGCCGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAA	1193	0.10315366610550379	No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC	1181	0.10211607684040235	No Hit
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC	1157	0.10004089831019941	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	2225	0.0	40.34548	1
GTGGTAT	415	0.0	39.934177	1
GGTATCA	995	0.0	36.781918	1
TGGTATC	455	0.0	35.639954	2
TATCAAC	2560	0.0	34.906837	2
ATCAACG	2660	0.0	33.047108	3
TCAACGC	2665	0.0	32.84581	4
CAACGCA	2690	0.0	32.54055	5
AACGCAG	2745	0.0	31.763006	6
ACGCAGA	3040	0.0	28.907469	7
AGAGTAC	3085	0.0	28.714186	11
CTATAGA	85	4.401867E-6	28.433523	1
ATCAGTG	1435	0.0	27.99835	70
CAGAGTA	3210	0.0	27.808382	10
CGCAGAG	3220	0.0	27.398546	8
GCAGAGT	3365	0.0	26.217926	9
CGTAAAA	85	1.3146333E-4	24.690287	60
GTATATA	85	1.4358267E-4	24.371592	1
AGTACGG	3175	0.0	23.457344	13
GAGTACG	3275	0.0	22.736172	12