Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005760843 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 970088 |
Sequences flagged as poor quality | 0 |
Sequence length | 20-76 |
%GC | 53 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 1785 | 0.0 | 40.43705 | 1 |
GCGTTAC | 35 | 0.0013425334 | 39.459473 | 28 |
GGTATCA | 810 | 0.0 | 37.946907 | 1 |
ATCAACG | 2145 | 0.0 | 33.45832 | 3 |
TCAACGC | 2140 | 0.0 | 33.36494 | 4 |
CAACGCA | 2200 | 0.0 | 32.61177 | 5 |
TATCAAC | 2270 | 0.0 | 31.781012 | 2 |
AACGCAG | 2270 | 0.0 | 31.606123 | 6 |
TATAAGA | 220 | 0.0 | 31.380121 | 2 |
ACGCAGA | 2445 | 0.0 | 29.20285 | 7 |
AGAGTAC | 2425 | 0.0 | 29.16072 | 11 |
CAGAGTA | 2530 | 0.0 | 28.08539 | 10 |
TGCGTTA | 50 | 0.007706759 | 27.620207 | 27 |
CGCAGAG | 2650 | 0.0 | 27.334251 | 8 |
GCAGAGT | 2800 | 0.0 | 25.7454 | 9 |
GTGGTAT | 395 | 0.0 | 25.355507 | 1 |
ATAAGAG | 305 | 0.0 | 23.756779 | 3 |
AGTACGG | 2575 | 0.0 | 23.044884 | 13 |
GTATAAG | 315 | 0.0 | 23.023966 | 1 |
GAGTACG | 2600 | 0.0 | 22.689436 | 12 |