FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005761005

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005761005
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1458528
Sequences flagged as poor quality0
Sequence length20-76
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT20550.14089547818074113No Hit
GTCCCACTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGG15620.10709427587266065No Hit
GTGTACACCTGTGGTTCTCGGGGCTGCCCTTTGGCTTTGGAGATGGTTTT15550.1066143399372518No Hit
GATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCGTCGAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCA15510.10634009083130389No Hit
GGTGTACACCCTGCCCCCATCCCGGGATGAGCTGACCAAGAACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTT15440.10586015489589502No Hit
CTATTATGCTGTAGACAGTAATAAGTTGCAAAATCTTCAGGCTGCAGGCTGCTGATTGTGAGAGTGAATTCTGTC15110.10359759977182474No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)