EGAF00005761118 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005761118
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1288000
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTTAGGACCCAGACGGAACCATGGAAGCCCCAGCGCAGCTTCTCTTCCTC	1792	0.1391304347826087	No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT	1713	0.1329968944099379	No Hit
GTGTACACCTGTGGTTCTCGGGGCTGCCCTTTGGCTTTGGAGATGGTTTT	1707	0.13253105590062111	No Hit
CTGTAGGACAGCCGGGAAGGTGTGCACGCCGCTGGTCAGGGCGCCTGAGT	1589	0.12336956521739131	No Hit
GTATAATCACTGGCAGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAACGAACTGTGGCTGCACCAT	1553	0.12057453416149068	No Hit
GTATGTACAGGGGGTACGTGCCAAGCATCCTCGTGCGACCGCGAGAGCCC	1514	0.11754658385093168	No Hit
GTCCTGGACCTCCTGTGCAAGAACATGAAACATCTGTGGTTCTTCCTTCTCCTGGTGGCAGCTCCCAGATGGGTC	1472	0.1142857142857143	No Hit
GGTGTACACCCTGCCCCCATCCCGGGATGAGCTGACCAAGAACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTT	1404	0.10900621118012423	No Hit
GCCCAGGGCCGCTGTGCCCCCAGAGGTGCTCTTGGAGGAGGGTGCCAGGG	1404	0.10900621118012423	No Hit
GTACAACAGCACGTACCGTGTGGTCAGCGTCCTCACCGTCCTGCACCAGG	1336	0.10372670807453416	No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC	1335	0.10364906832298136	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	1125	41.82572	1
GTATCAA	2460	37.975994	1
TATCAAC	2765	34.026146	2
TCAACGC	2900	32.31749	4
CAACGCA	2965	31.724798	5
ATCAACG	2960	31.666096	3
AACGCAG	3040	30.939713	6
AGAGTAC	3245	28.985125	11
CGCAGAG	3270	28.763523	8
GTGGTAT	460	28.372732	1
ACGCAGA	3465	27.144798	7
CAGAGTA	3520	26.81818	10
GCAGAGT	3545	26.629053	9
CAGCGCT	520	25.087261	4
AGTACGG	2990	24.453876	13
GAGTACG	3015	24.13725	12
GCGTAGA	885	23.24678	70
AGCGCTG	560	22.68228	5
GCAGTAT	800	21.69851	70
ATACCAT	1300	21.265776	70