EGAF00005761171 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005761171
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	612938
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT	870	0.14193931523253575	No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC	826	0.1347607751518098	No Hit
GTTAGTAGCCGCTTGGCCTGGTATCAGCAGAGACCAGGCAAAGCCCCTAA	799	0.13035576192045525	No Hit
GTAATAAACGGCCGTGTCCTCGGCTCTCAGGCTACTCATTTGCAGAAACA	778	0.1269296405182906	No Hit
GTGTACACCTGTGGTTCTCGGGGCTGCCCTTTGGCTTTGGAGATGGTTTT	749	0.1221983300105394	No Hit
GTATAATAATTTCCCGTGGACCTTCGGCCAAGGGACCAAGGTGGAGATCCAACGAACTGTGGCTGCACCAT	721	0.11763016814098652	No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG	659	0.10751495257269086	No Hit
AGTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTC	624	0.10180475023574978	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGTTC	20	0.0072531006	51.93716	40
CGTATGC	135	0.0	41.063824	41
GTATCAA	1390	0.0	40.96917	1
GCGTATG	35	0.0013236167	39.571167	40
TCGTATG	110	0.0	37.77248	40
TATCAAC	1575	0.0	36.80735	2
ATCAACG	1625	0.0	35.671906	3
TCAACGC	1635	0.0	35.453728	4
CAACGCA	1670	0.0	34.71069	5
AACGCAG	1700	0.0	34.29711	6
ATGCCGT	175	0.0	31.748453	44
AGAGTAC	1835	0.0	31.586987	11
TGCACTA	55	3.3682038E-4	31.181736	5
GCCGTTA	55	3.3698155E-4	31.179192	15
CTCGTAT	100	1.4144462E-8	31.123846	39
CAGAGTA	1865	0.0	31.078884	10
CGCAGAG	1880	0.0	30.830914	8
GAGCGAT	170	0.0	30.356264	32
GCAGAGT	1975	0.0	29.347908	9
TATACAC	200	0.0	29.154922	3