FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005761312

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005761312
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences106
Sequences flagged as poor quality0
Sequence length25-76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGTAGGTCCCCTGTGGAAAAAGGGTCAGAGGCCAAAGGATGGGAGGGGG21.8867924528301887No Hit
GTCACAATCACTTGCCGGGCAAGTCAGGGCATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCC21.8867924528301887No Hit
GGCTGGAACTGAGGAGCAGGTGGGGGCACTTCTCCCTCTAACACTCTCCC21.8867924528301887No Hit
ACATAAAACAAGATGGAAGTGAGAAACACTATGTGGACTCTGTGGAGGGCCGATTCACCATCTCCAGAGACAACG10.9433962264150944No Hit
GTGAGAAACACTATGTGGACTCTGTGGAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAGCTCCCTGTTT10.9433962264150944No Hit
CACCTGTGAGTTACCCTAAACTATGGCGATATCCACCTTCCACTATACTTTGGCCTCTCTGGGAAAGAAGATATT10.9433962264150944No Hit
ACGCAGAGTACTATTTTAGATGTTTTTTTTGTTTTTGT10.9433962264150944No Hit
GTCACCCATCACGGCCTGAGCTCGCCCGTCACAAACACCTTCAACAGCGCAGAGAGAAAGACCGAGAAGTGCCGG10.9433962264150944No Hit
CAGGATCCCCGTGTTTGGCCTGCACCTCGGCCAGCCTATGTCTCGTCAGCGCCTCAACCTACTCGTCCGCCATG10.9433962264150944No Hit
GTATCAACGCAGAATACGATTTTTTTATATATTATTATATTTTTTTTAAA10.9433962264150944No Hit
CTTATAAACAAATCAAGCTCCCTAAACAAAAACACGTGTAGCTATCGCTT10.9433962264150944No Hit
GCTATGAGTAACTCTAATGGGAGATACCCGATTGGAGTGAGTTATCAACCTTCAACTGTACCTGTGGCTTA10.9433962264150944No Hit
CCATTTGAATCTAAAAATAATAGATAGTAAAAATCAACCGCCCAGAAACA10.9433962264150944No Hit
GTACAAGTACTAACCCTCAGGCCGCCCCATCTCCGTCAACGCCAGGTACTCCCCCACGAAGCTGTCGA10.9433962264150944No Hit
AAGCGGAGGACTGTTATTATTATTTTTTTTTTTTTTTTATTTTTATATTTGTGGTTTGTGTATTTTGTGAT10.9433962264150944No Hit
CTATAACATAATGTACATAGACAAGACAACTTCGCCAGTATGAAACCTGA10.9433962264150944No Hit
CTCATGATCTCCCGGACCCCTGAGCTCACAAGCGTGGTGGTGGACGTGAG10.9433962264150944No Hit
GTACTTTTTTTTTTTTTTTTTATTTTTTATTTTAAGAAATTTAATTAAAA10.9433962264150944No Hit
CCATGATGATGCACGGCCGCAACAACGGCAAGAAGCTCATGACTGTGCGC10.9433962264150944No Hit
CTTCCACCTTGGTCCCCTGGCCGAACGTCCAAAGGCCACTGAAACTCTGTTGACAGTAGTAAGTTGCAAAATCTC10.9433962264150944No Hit
ACGTTGATTTTATTTTGAATTTTTTTGT10.9433962264150944No Hit
GATCAACGTATCAAAAAAAGCACTCCCAGCCCCCATAAAGAAAAACAACT10.9433962264150944No Hit
GGCACCTGGCACACATCTTCAGACATGCGGCCAAGGAGCTGTTCAACGAGGATGTGGAGGAGGTCACTTACCGAG10.9433962264150944No Hit
GCATGGACATGAGGCTCCCCGCTCAGCTCCTGGGGCTCCTGCTACTCTGG10.9433962264150944No Hit
ACTCCAAACAGCACACCCTTCTACACATTGAACAGATCTGCCAGGTTCACCTTTTTCACTGCCTCACATTCAAA10.9433962264150944No Hit
AATGACACTACCCACCCAAGCAAAAGATTACCACACGCACGTCCCCCAAC10.9433962264150944No Hit
GCGGAGGGACCATGGTGGAGATCAAAGGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGA10.9433962264150944No Hit
GGACCAAGGTGGAAATCAAACGAACTGTGGCTGCACCATCTGTCTTCATC10.9433962264150944No Hit
CAACATTTTTTTTATTTTTTTTTTT10.9433962264150944No Hit
GCCCTGGCTGCGGCAGGTACCACTCCCAAAAGGTGTAACCAGGTCTCGGCAGGAGGCTCTGACGAGGCCTACAGG10.9433962264150944No Hit
GGGGACCTACCCCTATTGCGGTCCTCCAGCTCATCTTTCACCTCACCCCCCTCCTCCTCCGTGGCTTTAATTATG10.9433962264150944No Hit
TTTTTGCAGGGGCCCAGGGCAGCGCTGGGTGCTTTATTTCCATGCTGGGCGCCCGGGAAGTATGTACAGGGGGTA10.9433962264150944No Hit
GTGGGAGAGCAATGGGCAGCCGGAGAACAACTACAAGACCACGCCTCCCGTGCTGGACTCCGACGGCTCCTTCTT10.9433962264150944No Hit
CAACAAACGATGCCGACGAATAAAGAAATGAAGATCTCGATGGACGAAGT10.9433962264150944No Hit
GTTGGGCTGCTCCTCCCGTGGCTGTGTCTTGGGAGTATGCCCCTCCATGCCGTCCGCGGACCCGTGGAGCTGG10.9433962264150944No Hit
CCATGGAATTGGGGCTGAGCTGGGTTTTCCTTGTTGTTATTTTAGAAGGTGTCCAGTGTGAGGT10.9433962264150944No Hit
AGACTGCACGGATTGTTTTAAGAAAATGGCAGACAAACCAGACATGGGGG10.9433962264150944No Hit
GGTATCAACGCAGAGAACGATTTTTTTTTTTATTTTATTTTTTTTTTAAA10.9433962264150944No Hit
AAGCAACGAAATTTATTTATTATTTT10.9433962264150944No Hit
TATCATGTGAGAGTACTTTTTTTGTTTTTTTTGTTTTTTTTTAATGAGAA10.9433962264150944No Hit
TAAAAACCCAAAGTAAGTGAAGAAATCAGTCATCCACCTCACATTAAAAA10.9433962264150944No Hit
GGCTGGTGGGATGGAAGGAAATGAGGTTTATTTTATAGGTAAATTTATTT10.9433962264150944No Hit
AGTCAAATCACAAGGGAAACAACAGAGTCAGTTACAGACTTAAACTGATCTTCGGAAGCCTGGAAGAATAAGA10.9433962264150944No Hit
GAGGACTGTAGGACAGCCGGGAAGGTGTGCACGCCGCTGGTCAGGGCGCC10.9433962264150944No Hit
GAGACTCTACAGGGGCAGGTAATTCACTGGTCCACAAGCGGTCTCCTTTACGTCGAAACCAAAAGACCCCAACAT10.9433962264150944No Hit
ATTCAAATCTGACGATACCGTCCCCGATATCCCTTTACCACACACTTCAATACCATAAATCTATCTATTATAAA10.9433962264150944No Hit
CGACTGAGCTGGTGTTGGGTTTGTTTGAGGATGCAAGGGCACCCAACTGTATAAACTGGTCAAATGGGAAGTG10.9433962264150944No Hit
TGAAAACAGTGCCTCAAACCCAGCCGCTCAATCAGACTGGGACACCAGACTCCCGATCAAACAACTTATAAATAA10.9433962264150944No Hit
GCAGTGAGCCAAGATCCTGCCACTGCATTCCAGCCTGGGCAACTGGGTGT10.9433962264150944No Hit
GGTCAGCCTGACCTGCCTGGTCAAAGGCTTCTATCCCAGCGACATCGCCGTGGAGTGGGAGAGCAATGGGCAGC10.9433962264150944No Hit
CAAAAACACATCATCAGAAGCCGAACCCCATATAACACAAGCTCTAGTAC10.9433962264150944No Hit
CCACAATTAGTGATCACTAAACAGCAACAATCCTTCCTTCCCTTCCAAGG10.9433962264150944No Hit
CCTCCACGCCGTCAACGTAAAAGTAGAAATTGACATCAGGGTCTTCGTGGCTCACGTCCCCCACAACGCAATTGA10.9433962264150944No Hit
CACTCTCACCATCAACACTCTGCAACCTGGAGATTTTGCAACTTACTACT10.9433962264150944No Hit
TCTCTCCCTTCTGCTTAACATTCACATCAGGAAAAAGAAGAAAACAAAGT10.9433962264150944No Hit
ATACACACAGCAATTAATATTTTACTTTTGTTATTATCAAGAATAATAAC10.9433962264150944No Hit
AAAAACATCAGACGCTCCAGACGAATAAAAACCTATAGATATCTGTTAACGCCAAATAAAAAAAAAAAAAATCA10.9433962264150944No Hit
AAAAAACACATCATGAAGACCCACTCACCAAAAAACAAAACATCTCAACATCACCAATTAATCCGCCAGAAAAAT10.9433962264150944No Hit
CATAACCCGATCACCAGCAAGCACAAAATAATGACAACGTGGCTCTCAGTAACATAAAAAAAAATCTTAAATGGG10.9433962264150944No Hit
TCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAGCCTCCACCAAGGGCCCATCGGTCTTCCCCCTGGCACC10.9433962264150944No Hit
GGTGTACACCCTGCCCCCATCCCGGGATGAGCTGACCAAGAACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTT10.9433962264150944No Hit
CAAGATCAGCAGCTTAGGGGCATTCCATGGTTTGTGATGATACCAAATTAAATAGTTGCAAATCTCCTGACTCGC10.9433962264150944No Hit
CAAATAAAATACTTACTAATCACAAGAATAACCAGGAAAATAAATCTCACTAAGACTA10.9433962264150944No Hit
AGCCAGCCCAGGCCTCGCCCTCCAGCTCAAGGCGGGACAGGTGCCCTAGAGTAGCCTGCATCCAGGGACAGGCCC10.9433962264150944No Hit
GTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATGAAGACAGATGG10.9433962264150944No Hit
GTATCAACGCAGAGTACGTTGTTGTTAGTGT10.9433962264150944No Hit
CTCAAAGAAAGATGTCCCTGTGCCCTACTCCTTGGCGATGGCAAAGGGCTTCTCCACCTCGATCTTGCCGCAGT10.9433962264150944No Hit
GAGAAGAGTCCAGAGTACTGTAGTACAACCAGGAAGATGTGAAAGAAACATTACAAAACACCTGAGTTCAAACA10.9433962264150944No Hit
GGTATCAACGCAGAGTACGTTTTTTTTTTTTTTTTTTTTTT10.9433962264150944No Hit
ATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATC10.9433962264150944No Hit
GAGACAACGCCAAGAGCTCCCTGTTTCTGCAAATGAAGAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTG10.9433962264150944No Hit
TTTCAACTGATAATAAAATGCACGCAATATCAAGACAGATTGTGCAACCACAGT10.9433962264150944No Hit
CTAACACCACCCAGAATATTAAATCAAAGCACCACTAGAACATGAACCTG10.9433962264150944No Hit
GAATCAGCTCAGAGTAAGTTGTTTATTTTTTTTTTTTTTTTT10.9433962264150944No Hit
CAAAAGACCATCACTACCAATAAAGAGCAATATATCTCATAAATCTCCCAATCAATAAAAAAAAAATGTCTGCAT10.9433962264150944No Hit
CAATTCCCTACACAATGCAACAATTCCAGCACGAAAGAACAAGACACAAC10.9433962264150944No Hit
GCTTTAACAAAACAAACACAACGATACAAAAAAACAAAACCTCAATAAAAAATTTCGGATGTGCCGACCTCGGAC10.9433962264150944No Hit
ATAAAAATCTGACTCTTCCTACGACACACGAAAACTACAACTCTGATTTC10.9433962264150944No Hit
ATAATATACCAACGACAACCACTTTGAGATGCAAACAAATTCTTAACCTCACAAAAACTAAAATCCCACTACAAA10.9433962264150944No Hit
CTACTGAATTTGCAACATTTAATACACTGGGAGCGCATACTACAACCCGTCCCACAAAACAATAGTTAGCAGTT10.9433962264150944No Hit
GTGCAGCCACAGTTCGCTTGATCTCCAGCATGGTCCCCTGGACAAAACTACGAGGAAAACTATAAAGCTAATGA10.9433962264150944No Hit
AACCAGAATACTTTTTTTATTTTATTATTAATAAAAATAAAAACACAAGAAAAAAAAAAAAAAAAAA10.9433962264150944No Hit
CTCCCACTCCACGGCGATGTCGCTGGGATAGAAGCCTTTGACCAGGCAGGTCAGGCTGACCTGGTTCTTGGTCAG10.9433962264150944No Hit
GGGTCCGCCAGGCTCCAGGCGAGGGGCTGGAGTGGGTGGCATTTATATCATATGATGG10.9433962264150944No Hit
CCACCGCGCCTAGCCACTTTTTTTTTTTTTTTTTTTT10.9433962264150944No Hit
TGTTGGGGTTTATTACTGCATGCACGCTCTGCAAACTTCATTCCCTTTCGGCCCTGGGACCAAAGTGGATAACAA10.9433962264150944No Hit
CGCATAGTACGTTGTGTGTTTTTTTTTTTTTTTTTTTTTTGGAGCAATAC10.9433962264150944No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAA10.9433962264150944No Hit
ATACACATCTGCCGCTGGCGACGCTCCGTACGTGTAGATCTCGGTGGTCG10.9433962264150944Illumina RNA PCR Primer (100% over 21bp)
GCTTGAGGAAGACTGACGGTCCCCCCAGGAGTTCAGGTGCTGGGCACGGTGGGCATGTGTGAGTCTTTATCTTAT10.9433962264150944No Hit
GATACGTGGGAGGCCATGGAAGGCATCTTCATCAAGCCTAGTGTGGAGCC10.9433962264150944No Hit
TTGGAGATGGTTTTCTCGATGGGGGCTGGGAGGGCTTTGTTGGAGACCTTGCACTTGTACTCCTTGCCATTCAG10.9433962264150944No Hit
CAGTTTACAGATAAGAAAACTAAGGTTAAGAGTGACAAAGTGGCAACATAAACGGCAGGACTTAAGTACAGGA10.9433962264150944No Hit
ACCATAGAGCATAACTAACACACCCCAAATAAAATATTTATACAATTAAA10.9433962264150944No Hit
AGATATATCCAATCCACTCCAGTCCCTGCCCTGGGGGCTGCCGGATCCAGCTCCAGTAGTAACTACTGATGGAGC10.9433962264150944No Hit
GCGGACCAAGCTCTAGATAAAGCGAACTGTGGCTGCACCATCTGTCTTCA10.9433962264150944No Hit
GATTCACTTTATTAATTCATTATCATCCAACATTAGCATAATTAAATCCA10.9433962264150944No Hit
CCACAGCACGTACCGTGTGGTCAGCGTCCTCACCGTCCTGCACCAGGACTGGCTGAATGGCAAGTAGTACAAGTG10.9433962264150944No Hit
CCCTCATGATCTCCCGGACCCCGGAGGTCACATGCGTGTTGGTGGAAGTG10.9433962264150944No Hit
GGAACACATGGCAGCTGGTCAGCTGGGGGAACTGTCAAGACCGGGGCTCA10.9433962264150944No Hit
CGCAGAGGACTTTTTAATATTTTATTTTATTTT10.9433962264150944No Hit
CAAAAACACAGAGCCCCTATCACGTCATATGAAAACTCCTGTGAATCCCTAAAAATTTACTAAAAGCGACCCAG10.9433962264150944No Hit
GCTCTGCACAACCACTACACGCAGAAGAGCCTCTCCCTGTCCCCGGGTAAATGAGTGCGACGCCCGGCAAGCCCC10.9433962264150944No Hit

[OK]Adapter Content

Adapter graph