FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005761458

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005761458
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences590076
Sequences flagged as poor quality0
Sequence length20-76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG69841.1835763528765786No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT8580.14540499867813636No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC6740.11422257471918872No Hit
CTATGATAGTTATCCGTACACTTTTGGCCAGGGGACCAAGGTGGAGATCAAACGAACTGTGGCTGCACCAT6680.11320575654661434No Hit
GTCTACGCCTGCGAAGTCACCCATCAGGGCCTGAGCTCGCCCGTCACAAA6470.109646892942604No Hit
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC6350.10761325659745524No Hit
GAGTATTAGTGATTCGGTGGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGGCCCTGATGTGTAAGGCGTC6230.10557962025230648No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC6010.10185128695286709No Hit
CTATCATAGTGTTGGCAGTAATAAATTGCAAAATCATCAGGCTGCAGGCTGTCGATGGTGAGAGCGAATTCTGTC6000.10168181725743802No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)