EGAF00005761459 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005761459
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1222792
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATTACTGTCAGCACTATGGTAGCTCACTCACTTTCGGCGGAGGGACCAGGGTGGAGATCAAACGAACTGTGG	2184	0.17860764545401017	No Hit
GTTAGGACCCAGAGGGAACCATGGAAACCCCAGCGCAGCTTCTCTTCCTCCTGCTACTCTGGCTCCCAGATATCA	1999	0.16347833482718238	No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT	1897	0.15513676896806652	No Hit
CAGTAATACACTGCAAAATCTTCAGGCTCCAGTCTGCTGATGGTGAGAGTGAAGTCTGTGCCAGACCCACTGCCA	1775	0.1451596019601044	No Hit
GTCATAGGTGGTCAGGTCTGTGACCAGGCAGGTCAACTTGGTGGACTTGG	1594	0.1303574115630459	No Hit
CTCCTGCAGGGCCAGTCAGAGTGTTAGCGGCAGCTACTTAGCCTGGTACC	1529	0.12504170782929558	No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC	1474	0.12054380466996839	No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG	1335	0.10917637668548699	No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC	1304	0.1066411949047753	No Hit
CTTATACACATCTCCGAGCCCACGAGACTGCAGCTAATCTCGTATGCCGT	1271	0.10394245300917898	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGCGT	25	2.6589195E-4	54.809258	37
GTGGTAT	390	0.0	43.385887	1
CTTATAC	310	0.0	42.57415	1
TATACAC	305	0.0	42.1522	3
TGGTATC	390	0.0	41.645336	2
GTATCAA	2775	0.0	39.75554	1
GGTATCA	1165	0.0	38.924404	1
GCTAATC	320	0.0	35.129894	33
TCGTATG	305	0.0	35.005802	40
TATCAAC	3165	0.0	34.959385	2
TTATACA	380	0.0	34.72728	2
ACGAGAC	365	0.0	34.305965	22
TCAACGC	3300	0.0	33.522377	4
CGTATGC	340	0.0	33.482582	41
ATCAACG	3335	0.0	33.17328	3
CAACGCA	3405	0.0	32.68735	5
AACGCAG	3405	0.0	32.485985	6
ACGCAGA	3510	0.0	31.41781	7
CGAGACT	400	0.0	31.304195	23
ATGCCGT	370	0.0	30.00811	44