FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005761520

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005761520
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences927682
Sequences flagged as poor quality0
Sequence length20-76
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT13950.15037480515952664No Hit
GTTAGGACCCAGACGGAACCATGGAAGCCCCAGCGCAGCTTCTCTTCCTCCTGCTACTCTGGCTCCCAGAAACCA12570.1354990179824552No Hit
GTATAATGACTGGTTCTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAACGAACTGTGGCTGCACCAT12200.131510582290052No Hit
GTCATTATACTGCTGACAGTAATAAACCGCAAAATCTTCAGACTGCAGGCTGCTGATGGTGAGAGTGAAGT10280.1108138349132569No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)