EGAF00005761538 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005761538
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	59721
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	2953	4.944659332563085	No Hit
CCATTTCTCTGCGCAGGCACCCGTACTCTGCGTTGATAC	171	0.2863314412015874	No Hit
GTATCAACGCAGAGTACGGGTGCCTGCGCAGAGAAATGG	166	0.27795917683896787	No Hit
GGTATCAACGCAGAGTACGGGTGCCTGCGCAGAGAAATGG	98	0.1640963815073425	No Hit
CCATTTCTCTGCGCAGGCACCCGTACTCTGCGTTGATACC	78	0.13060732405686443	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT	78	0.13060732405686443	No Hit
CGCCATTTCTCTGCGCAGGCACCCGTACTCTGCGTTGATAC	77	0.12893287118434052	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	75	0.1255839654392927	No Hit
GTATCAACGCAGAGTACGGGTGCCTGCGCAGAGAAATGGCGGGACAAAAA	73	0.12223505969424492	No Hit
GTATCAACGCAGAGTACGGGTGCCTGCGCAGAGAAATGGCG	73	0.12223505969424492	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT	69	0.11553724820414929	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTATTG	10	0.008261633	137.5269	70
GCGGGCC	15	0.0035637016	62.082912	13
AGCACGC	15	0.0035637016	62.082912	8
ATTCGAA	20	0.0050669326	56.787792	49
GCGAATC	20	0.006438173	53.45697	38
CGGTTCG	20	0.009552302	48.38577	29
GCGGTTC	20	0.009851705	48.009716	28
TGAGGTG	30	9.0606854E-4	42.6753	28
AAGAGTA	30	0.0010536613	41.388607	10
TCAACTC	30	0.0010536613	41.388607	4
GTCCCAA	80	7.4578566E-11	40.008095	28
CAGGTGG	35	0.002237977	35.505688	1
ATCAACT	35	0.0022472118	35.475952	3
CAACTCA	35	0.0022472118	35.475952	5
CGCGAGG	45	0.002693763	34.17566	52
AGTCCCA	85	6.490154E-9	33.599064	27
TACGGGG	325	0.0	33.485348	15
CAGTCCC	85	6.7684596E-9	33.455845	26
TCAGTCC	85	6.9976522E-9	33.342148	25
CTCAGTC	85	7.234121E-9	33.229218	24