FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005761568

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005761568
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences693939
Sequences flagged as poor quality0
Sequence length20-76
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38940.5611444233570962No Hit
GTGTATTACTGTCAGCACTATGATACCTCACCTATGTACACTTTTGGCCA16150.23272938975904223No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT15070.21716606214667286No Hit
GTTAGGACCCAGAGGGAACCATGGAAACCCCAGCGCTGCTTCTCTTCCTCCTGCTACTCTGGCTCCCAGATACCA14680.2115459716199839No Hit
GTAATACACTGCACAGTCTTCAGGCTCCAGTCTGCTGATGGTGAGAGTGAAGTCTGTCCCAGACCCACTGCCA14270.20563767132269553No Hit
GTATTACTGTCAGCACTATGATACCTCACCTATGTACACTTTTGGCCAGGGGACCAAGGTGGAGATCAAACGAA12730.18344551898653916No Hit
CAGTAATACACTGCACAGTCTTCAGGCTCCAGTCTGCTGATGGTGAGAGTGAAGTCTGTCCCAGACCCACTGCCA10980.15822716405908877No Hit
GTAGATGAGGAGCCTGGGAGCCTGGCCAGGTTTCTGCTGGTACCAGGCTAAGTAACGACTACTTACACTCTGA10650.15347170284419814No Hit
CTATGATACCTCACCTATGTACACTTTTGGCCAGGGGACCAAGGTGGAGATCAAACGAACTGTGGCTGCACCAT10270.14799571720280888No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC10200.14698698300571086No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG9250.1332970189022378No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC8780.12652408929315112No Hit
CTCCTGCAGGGCCAGTCAGAGTGTAAGTAGTCGTTACTTAGCCTGGTACC8680.12508304044015398No Hit
GTATCATAGTGCTGACAGTAATACACTGCACAGTCTTCAGGCTCCAGTCTGCTGATGGTGAGAGTGAAGTCTGTC8640.12450662089895509No Hit
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC8590.12378609647245652No Hit
GTCCTGCTCTGTGACACTCTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCT8590.12378609647245652No Hit
CCTCATCTACAGTGCATCCATCAGGGCCACTGGCGTCCCAGACAGGTTCAGTGGCAGTGGGTCTGGGACAGACTT8530.12292146716065822No Hit
GAGTGTAAGTAGTCGTTACTTAGCCTGGTACCAGCAGAAACCTGGCCAGG8320.11989526456936417No Hit
GTCCCAGACCCACTGCCACTGAACCTGTCTGGGACGCCAGTGGCCCTGAT7970.11485159358387409No Hit
GTCTTCAGGCTCCAGTCTGCTGATGGTGAGAGTGAAGTCTGTCCCAGACC7730.1113930763366809No Hit
GTCTACGCCTGCGAAGTCACCCATCAGGGCCTGAGCTCGCCCGTCACAAA7610.1096638177130843No Hit
CTGTAGATGAGGAGCCTGGGAGCCTGGCCAGGTTTCTGCTGGTACCAGGCTAAGTAACGACTACTTACACTCTGA7560.1089432932865857No Hit
CCCCAGCGCTGCTTCTCTTCCTCCTGCTACTCTGGCTCCCAGATACCACCGGAGAAGTTGTGTTGACGCAGTCTC7520.10836687374538685No Hit
GTGTACACCTGTGGTTCTCGGGGCTGCCCTTTGGCTTTGGAGATGGTTTT7450.10735813954828882No Hit
CATCTACAGTGCATCCATCAGGGCCACTGGCGTCCCAGACAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCA7440.10721403466298911No Hit
CTCTGGGATAGAAGTTATTCAGCAGGCACACAACAGAGGCAGTTCCAGAT7250.1044760418422945No Hit
GCTCAGTTAGGACCCAGAGGGAACCATGGAAACCCCAGCGCTGCTTCTCT7220.10404372718639535No Hit
CAGTTAGGACCCAGAGGGAACCATGGAAACCCCAGCGCTGCTTCTCTTCCTCCTGCTACTCTGGCTCCCAGATAC7160.10317909787459704No Hit
CTCCAGGCACCCTGTCTTTGTCTCCAGGGGAGAGAGCCACCCTCTCCTGC6960.10029700016860271No Hit
GTCTTTGTCTCCAGGGGAGAGAGCCACCCTCTCCTGCAGGGCCAGTCAGA6960.10029700016860271No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)