FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005761660

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005761660
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences240449848
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCTACAG6684739527.80097203471719Illumina DpnII expression Adapter 1 (100% over 8bp)
CCGAGGCA6351933226.41687342634544No Hit
GATGCAGT5933049324.674789147714495No Hit
AGACTTTC4762037719.80470247583604No Hit
TTCTACAA2757260.11467089802443958No Hit
AGACTTTA2752910.11448998711781262No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)