FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005761664

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005761664
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences247416710
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTGCGT7458712130.146355514952887No Hit
CAACCATC7172167128.98820819337546No Hit
TCTATTAG6496570926.2576076611802No Hit
GTGGAGCA3076362612.433932210965056No Hit
GGGGAGCA9439340.38151586447010793No Hit
CAACCATA5174150.20912694215358374No Hit
TGCTGCGT4086440.1651642688159583No Hit
TCTATTAA3225500.130367104145876No Hit
AGCTGCGA2775130.11216421073580682No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)