FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005761668

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005761668
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences243293573
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTGCGT7318014430.078946639498778No Hit
CAACCATC7065943229.04286830462225No Hit
TCTATTAG6384099326.240312151607885No Hit
GTGGAGCA2998021712.322650627519865No Hit
GGGGAGCA10784880.4432866790114509No Hit
TGCTGCGT5291350.21748827701256213No Hit
CAACCATA5143780.21142276536832313No Hit
TCTATTAA3154430.12965529508664828No Hit
AGCTGCGA2556640.10508456793472305No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)