Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005762647 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4107596 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCGAGTA | 1225 | 0.0 | 44.175957 | 2 |
CGAGTAG | 1140 | 0.0 | 44.15838 | 3 |
CCCGAGT | 1385 | 0.0 | 40.15257 | 1 |
CGTCGAG | 200 | 0.0 | 37.702583 | 1 |
GCTGGGA | 9700 | 0.0 | 34.882137 | 9 |
CGGAGGT | 1470 | 0.0 | 34.526196 | 7 |
GAGTAGC | 2910 | 0.0 | 33.4666 | 4 |
AGTAGCT | 4650 | 0.0 | 33.08484 | 5 |
TACTCGG | 925 | 0.0 | 33.06023 | 3 |
CCCAAAG | 7180 | 0.0 | 32.49091 | 1 |
GTAGCTG | 4770 | 0.0 | 31.723791 | 6 |
CTACTCG | 965 | 0.0 | 31.208784 | 2 |
TAGCTGG | 5135 | 0.0 | 31.2073 | 7 |
GCTACTC | 2365 | 0.0 | 30.688148 | 1 |
AAAGTGC | 6125 | 0.0 | 30.417486 | 4 |
CCAAAGT | 6745 | 0.0 | 30.278334 | 2 |
AAGTGCT | 6200 | 0.0 | 30.125416 | 5 |
AGTGCTG | 6420 | 0.0 | 29.280098 | 6 |
TTGGGAG | 7095 | 0.0 | 29.011438 | 6 |
GGAGGCT | 7085 | 0.0 | 28.919376 | 9 |