FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005763088

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005763088
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2810056
Sequences flagged as poor quality0
Sequence length100
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGTACG608.815228E-539.1757932
CTACTCG5750.038.4263462
CGCGTAA250.001703618337.59538336-37
GCTACTC15150.034.4442831
CGGAGGT10650.033.984917
TACTCGG6400.033.7891243
TTGGGAG48150.032.9974866
GGAGGCT47050.032.769289
CCCAAAG46450.032.2858161
GCTGGGA55850.031.8142229
GGGAGGC60000.031.1806058
GGCGGAG14750.030.2782425
CCCGTTA1252.360066E-730.0875451
GCGGAGG12350.030.069116
GGAGGTT28700.029.9724258
CGAGTAG5900.029.4814473
AGGCGGA15550.029.3251634
AGTAGCT26900.029.0104775
ATTCGCG650.006148655428.929824
TAGCTGG30100.028.8901777
Produced by FastQC (version 0.11.5)