Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005763352 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2988175 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGAGTAG | 1105 | 0.0 | 69.47538 | 3 |
CTACTCG | 1095 | 0.0 | 64.130424 | 2 |
TACTCGG | 1195 | 0.0 | 57.76883 | 3 |
GCTACTC | 2935 | 0.0 | 57.23082 | 1 |
GAGTAGC | 3035 | 0.0 | 56.66862 | 4 |
CCGAGTA | 1420 | 0.0 | 55.739044 | 2 |
AGTAGCT | 5030 | 0.0 | 55.487328 | 5 |
GCTGGGA | 11560 | 0.0 | 55.06515 | 9 |
TTGGGAG | 8585 | 0.0 | 54.952034 | 6 |
GTAGCTG | 5475 | 0.0 | 51.613155 | 6 |
GGAGGCT | 9230 | 0.0 | 51.111942 | 9 |
AAGTGCT | 6695 | 0.0 | 50.132286 | 5 |
AAAGTGC | 6840 | 0.0 | 49.158188 | 4 |
TAGCTGG | 6320 | 0.0 | 48.854115 | 7 |
CCCGAGT | 1685 | 0.0 | 48.782963 | 1 |
GGGAGGC | 11705 | 0.0 | 47.064175 | 8 |
AGTGCTG | 7255 | 0.0 | 46.65796 | 6 |
CCCAAAG | 8480 | 0.0 | 46.359318 | 1 |
ACTTTGG | 6955 | 0.0 | 46.035053 | 3 |
TTTGGGA | 8160 | 0.0 | 46.018047 | 5 |