Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005764079 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 10296069 |
Sequences flagged as poor quality | 0 |
Sequence length | 100-150 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGAGTAG | 5655 | 0.0 | 80.673096 | 3 |
TACTCGG | 9225 | 0.0 | 80.24355 | 3 |
CTACTCG | 9095 | 0.0 | 78.769104 | 2 |
CCGAGTA | 6070 | 0.0 | 77.06331 | 2 |
GCTACTC | 22055 | 0.0 | 75.941666 | 1 |
GAGTAGC | 15035 | 0.0 | 75.699974 | 4 |
AGTAGCT | 24885 | 0.0 | 75.02485 | 5 |
GCTGGGA | 62255 | 0.0 | 72.31893 | 9 |
GTAGCTG | 25975 | 0.0 | 71.27161 | 6 |
GGAGGCT | 51860 | 0.0 | 67.97177 | 9 |
TCGGGAG | 11765 | 0.0 | 66.89289 | 6 |
AAGTGCT | 40455 | 0.0 | 65.88818 | 5 |
CTCGGGA | 11495 | 0.0 | 65.21191 | 5 |
AAAGTGC | 40270 | 0.0 | 65.14286 | 4 |
CCCGAGT | 7765 | 0.0 | 64.72662 | 1 |
ACTCGGG | 11440 | 0.0 | 64.29572 | 4 |
TAGCTGG | 29735 | 0.0 | 64.01594 | 7 |
TTGGGAG | 38330 | 0.0 | 63.955265 | 6 |
CCAAAGT | 43765 | 0.0 | 63.762405 | 2 |
AGTGCTG | 41770 | 0.0 | 63.194023 | 6 |