Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005764169 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3995674 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TTGGGAG | 7305 | 0.0 | 32.235687 | 6 |
CGAGTAG | 1285 | 0.0 | 31.485973 | 3 |
CCGAGTA | 1315 | 0.0 | 31.485556 | 2 |
AGTAGCT | 4760 | 0.0 | 30.241144 | 5 |
GAGTAGC | 3180 | 0.0 | 29.733955 | 4 |
GCTGGGA | 9130 | 0.0 | 29.597984 | 9 |
CGTCGAG | 160 | 2.0863808E-9 | 29.44242 | 1 |
CCCGAGT | 1660 | 0.0 | 28.945797 | 1 |
GTAGCTG | 4900 | 0.0 | 28.872862 | 6 |
GGAGGCT | 6900 | 0.0 | 28.674646 | 9 |
GGGAGGC | 9150 | 0.0 | 28.40545 | 8 |
TTCGGCG | 100 | 5.2946285E-5 | 28.225069 | 5 |
TACTCGG | 1070 | 0.0 | 27.260242 | 3 |
TAGCTGG | 5710 | 0.0 | 27.245173 | 7 |
GCACTTT | 6985 | 0.0 | 26.976587 | 1 |
CTACTCG | 1020 | 0.0 | 26.292334 | 2 |
TTTGGGA | 7795 | 0.0 | 26.070621 | 5 |
TCGCGTT | 145 | 8.592615E-7 | 25.954086 | 5 |
TGGGAGG | 9580 | 0.0 | 25.609594 | 7 |
GCTACTC | 2915 | 0.0 | 25.533592 | 1 |