FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005764632

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005764632
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12519962
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCGTG96900.06.424040394-95
AGATCGG225400.06.377231694-95
TCGTGTA90000.06.335771694-95
GTCGTGT99900.06.326257794-95
GCGTCGT100050.06.174289794-95
GATCGGA204050.06.08969994-95
CGTGTAG90650.06.02824394-95
AGCGTCG108800.05.917947394-95
AGAGCGT139250.05.88646694-95
TAGATCG69600.05.734965394-95
GAGCGTC129450.05.708067494-95
ATCGGAA195500.05.541774394-95
AAGAGCG158000.05.503700394-95
TCGGAAG203050.05.183694-95
CGGAAGA204900.05.020843594-95
AAGATCG75750.05.018432694-95
Produced by FastQC (version 0.11.5)