EGAF00005764770 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005764770
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3063229
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCTAG	370	1.9771855E-4	7.7043643	94-95
CACGCTA	440	1.878491E-4	7.018559	94-95
GCGTCGT	1565	0.0	6.6787567	94-95
AAGAGCG	2735	0.0	6.6010575	94-95
AGCGTCG	1725	0.0	6.47241	94-95
AGAGCGT	2465	0.0	6.4567676	94-95
TAGATCG	1165	4.5474735E-11	6.115601	86-87
TCGTGTA	1310	2.7284841E-11	5.8027782	94-95
CGTGTAG	1445	1.8189894E-12	5.7538357	92-93
ATCGGAA	3280	0.0	5.7215085	92-93
CGGAAGA	3590	0.0	5.558302	94-95
GAGCGTC	2160	0.0	5.4988713	94-95
CGTCGTG	1525	1.0913936E-11	5.4519954	94-95
GATCGGA	3265	0.0	5.238496	92-93
GTCGTGT	1500	2.0008883E-10	5.2254443	90-91
GTTCACG	875	4.325871E-5	5.1582556	94-95
AGATCGG	3630	0.0	5.038307	90-91
TCGGAAG	3545	0.0	5.0251102	90-91