EGAF00005764802 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005764802
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	10477242
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTGTA	6720	0.0	6.5039053	94-95
GTCGTGT	7385	0.0	6.368547	94-95
GCGTCGT	8235	0.0	6.2303987	94-95
CGTCGTG	7980	0.0	6.191361	94-95
AGCGTCG	9135	0.0	6.058611	94-95
CGTGTAG	6800	0.0	5.7986226	94-95
GAGCGTC	10585	0.0	5.7672386	94-95
GATCGGA	16165	0.0	5.672014	94-95
TAGATCG	5295	0.0	5.5626454	94-95
ATCGGAA	15550	0.0	5.5450044	92-93
TCGGAAG	15830	0.0	5.5069466	94-95
CGGAAGA	16310	0.0	5.4468236	94-95
GCTTACG	1895	0.0	5.3894506	90-91
AGATCGG	17675	0.0	5.375591	94-95
TTACGGT	1735	0.0	5.33938	94-95
TACGGTG	1915	0.0	5.33366	94-95
AGAGCGT	11270	0.0	5.1005516	92-93