EGAF00005764804 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005764804
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	10747579
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCGTG	9130	0.0	6.9465904	94-95
GCGTCGT	9425	0.0	6.5275407	94-95
TCGTGTA	7745	0.0	6.3179617	94-95
GTCGTGT	8685	0.0	6.263208	94-95
AGCGTCG	10175	0.0	6.2331424	92-93
CGTGTAG	7765	0.0	6.0875535	94-95
TAGATCG	6035	0.0	5.9827037	94-95
GATCGGA	18625	0.0	5.726394	94-95
ATCGGAA	17955	0.0	5.649027	94-95
ATCCGTA	1915	0.0	5.5817957	92-93
AGATCGG	20225	0.0	5.520018	94-95
GAGCGTC	11940	0.0	5.47091	94-95
CCGTAGT	2000	0.0	5.463351	94-95
AGAGCGT	12875	0.0	5.3872466	94-95
GTGTAGG	9450	0.0	5.278599	94-95
AAGAGCG	14180	0.0	5.2432346	94-95
TCGGAAG	18115	0.0	5.231976	94-95
CGGAAGA	18380	0.0	5.1436186	94-95