EGAF00005764850 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005764850
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	10967628
Sequences flagged as poor quality	0
Sequence length	101
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTGTA	7525	0.0	7.0078917	94-95
GTCGTGT	8385	0.0	6.45911	94-95
GATCGGA	18650	0.0	6.457584	94-95
ATCGGAA	17830	0.0	6.1816945	94-95
GAGCGTC	11880	0.0	6.0185375	94-95
AGAGCGT	12565	0.0	5.9740033	94-95
CGTCGTG	8675	0.0	5.969253	92-93
AGATCGG	20470	0.0	5.929853	94-95
GCGTCGT	9130	0.0	5.9059267	92-93
AGCGTCG	9985	0.0	5.899898	94-95
CGTGTAG	7590	0.0	5.852491	94-95
AAGAGCG	14130	0.0	5.73262	94-95
TCGGAAG	18055	0.0	5.5783954	94-95
TAGATCG	5810	0.0	5.5194845	94-95
CGGAAGA	18370	0.0	5.1723957	94-95
CGTAGTG	2075	0.0	5.037041	94-95