FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005765146

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005765146
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6991609
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTGTA33600.07.35117894-95
CGTCGTG38150.06.47443292-93
CGTGTAG35350.06.11385194-95
AGCGTCG41000.05.96645490-91
GTCGTGT37500.05.82665792-93
GCGTCGT38100.05.61022790-91
AGAGCGT52250.05.363627494-95
GATCGGA71250.05.19999192-93
TCGGAAG75750.05.079199394-95
AGATCGG78100.05.078416394-95
ATCGGAA70550.05.04960294-95
GAGCGTC50450.05.03715794-95
Produced by FastQC (version 0.11.5)