FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005765172

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005765172
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14117572
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTCGT99550.06.25055394-95
AGCGTCG109300.06.084099394-95
TAAGCGT23950.06.048988394-95
TCGTGTA82900.05.6437894-95
GAGCGTC132450.05.61242894-95
CGTGTAG93900.05.58965794-95
GTAAGCG28150.05.568317494-95
GATCGGA192200.05.560547494-95
CGTCGTG96650.05.553477394-95
AGATCGG209650.05.414912794-95
AGAGCGT140650.05.335876594-95
GTCGTGT91450.05.323883594-95
ATCGGAA187950.05.23138294-95
TAGATCG64200.05.031092692-93
AAGAGCG153500.05.028441494-95
Produced by FastQC (version 0.11.5)