EGAF00005765180 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005765180
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	12544346
Sequences flagged as poor quality	0
Sequence length	101
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAGTCG	2485	0.0	6.4989324	94-95
CGTGTAG	11280	0.0	6.316429	94-95
TCGTGTA	11325	0.0	6.2284174	94-95
GTCGTGT	12440	0.0	6.1092663	94-95
AGCGTCG	13370	0.0	6.057347	94-95
ATCGGAA	22045	0.0	6.0007367	94-95
CGTCGTG	11855	0.0	5.8297634	94-95
TAGTCGT	2615	0.0	5.812564	94-95
TAGATCG	7780	0.0	5.7390203	94-95
GATCGGA	22745	0.0	5.7116404	94-95
GCGTCGT	12220	0.0	5.675069	94-95
AGATCGG	24880	0.0	5.3647103	92-93
AAGAGCG	18015	0.0	5.2601495	94-95
GAGCGTC	15475	0.0	5.2333913	94-95
TCGGAAG	22395	0.0	5.1433983	94-95
AGAGCGT	16225	0.0	5.0500393	92-93