EGAF00005765182 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005765182
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	15506311
Sequences flagged as poor quality	0
Sequence length	101
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTGTA	10775	0.0	6.4581776	94-95
GCGTCGT	12980	0.0	6.221052	94-95
CGTCGTG	12615	0.0	6.156305	94-95
GTCGTGT	11840	0.0	6.03774	94-95
AGAGCGT	17700	0.0	5.8368106	94-95
GATCGGA	25385	0.0	5.6509233	94-95
CGTGTAG	10760	0.0	5.6505055	94-95
TAGATCG	8300	0.0	5.6369963	94-95
AGATCGG	27350	0.0	5.6270056	94-95
AGCGTCG	14135	0.0	5.527894	92-93
ATCGGAA	24435	0.0	5.423523	94-95
AAGAGCG	19975	0.0	5.3979483	94-95
GAGCGTC	16420	0.0	5.178089	94-95
AAGATCG	9400	0.0	5.0784106	94-95
TCGGAAG	25225	0.0	5.018289	94-95