FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005765188

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005765188
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8168860
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTCGT67650.06.49476994-95
CGTCGTG65850.06.203438394-95
TCGTGTA55750.06.049274494-95
TCGGAAG134500.05.89771894-95
ATCGGAA131300.05.860573394-95
GTCGTGT60450.05.81467294-95
AGAGCGT93250.05.781450794-95
TCGCGAG5050.0067064745.64349870-71
GATCGGA136750.05.627024792-93
AGCGTCG74600.05.603185792-93
GAGCGTC89000.05.44377394-95
CGTGTAG60500.05.41730894-95
AGATCGG147850.05.34912594-95
TAGATCG43400.05.308133694-95
CGGAAGA134250.05.21876394-95
AAGAGCG106000.05.198067794-95
Produced by FastQC (version 0.11.5)