EGAF00005765189 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005765189
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	7466509
Sequences flagged as poor quality	0
Sequence length	101
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTACG	1020	0.0	7.4508595	94-95
GTTACGT	1160	0.0	6.551618	92-93
ACACGTC	6430	0.0	6.2790585	94-95
CACACGT	7565	0.0	6.278814	94-95
ACGTTAC	1565	0.0	6.221944	94-95
GATCGGA	13015	0.0	5.9305606	94-95
AGATCGG	14110	0.0	5.8069577	94-95
CACGTTA	1760	0.0	5.8024626	94-95
ATCGGAA	12590	0.0	5.7157536	94-95
CACGTCT	6245	0.0	5.552352	94-95
GCACACG	8815	0.0	5.4153967	94-95
TAGATCG	4300	0.0	5.412703	94-95
TCGGAAG	12925	0.0	5.310359	94-95
ACGTCTG	5680	0.0	5.310213	92-93
CGGAAGA	12970	0.0	5.291934	94-95
CGTCTGA	5390	0.0	5.199359	94-95