FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005765190

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005765190
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7466509
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCGTG63050.07.11928394-95
GTCGTGT57800.06.697601394-95
GCGTCGT66150.06.49842794-95
AGCGTCG70950.06.32657992-93
TCGTGTA53150.06.07708394-95
GATCGGA131000.05.946509494-95
GAGCGTC83600.05.937444794-95
AGAGCGT89500.05.864470594-95
AGATCGG141750.05.813878594-95
ATCGGAA124400.05.65107294-95
AAGAGCG101350.05.50685594-95
TCGGAAG125250.05.46102694-95
CGGAAGA127050.05.2901994-95
CGTGTAG53500.05.23826992-93
TAGATCG42700.05.17266894-95
Produced by FastQC (version 0.11.5)