FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005765220

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005765220
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6658436
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGATAC4100.0049083896.37189478-79
GCGTCGT36650.06.28575594-95
AGCGTCG39900.05.892803794-95
CGTGTAG34750.05.467576594-95
ATCGGAA66600.05.420371594-95
TCGTGTA34650.05.34627294-95
AGATCGG74200.05.185263694-95
AAGATCG28050.05.16483894-95
GATCGGA67200.05.01855694-95
Produced by FastQC (version 0.11.5)