FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005765596

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005765596
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences123513232
Sequences flagged as poor quality0
Sequence length26
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGACGGC424350.018.201731
CAATGGA392450.017.9526848
GCCGAAG266400.017.7153473
GCATGCG509200.017.6873261
ATGCGAT368450.017.6834031
TGAGCAT497650.017.6234251
CGGACTG353050.017.6075271
GAATGAA379700.017.5362221
GGGACCT340250.017.3702341
GGGATGA331400.017.3692361
GGAAAGC484950.017.3402671
CTGCGGA298250.017.3376181
ACTGATG356700.017.337611
GGGAATG381350.017.268851
TCGGTAA487200.017.2417051
ATAGACC290350.017.1616121
TGCGGGT313350.017.1214851
GACCAAT456200.017.1020031
TGCGTGG317350.017.0822091
TGCTACC529100.017.0807021
Produced by FastQC (version 0.11.5)