FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005765602

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005765602
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences110547433
Sequences flagged as poor quality0
Sequence length26
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CATGGCG425750.018.4261321
TGACGGC360650.018.390761
CAATGGA448950.018.1483468
CGGACTG369200.018.1463811
GGGAGAT388700.018.0929411
GCGCGAT321000.018.0106531
TTGAACG375850.017.875881
GCCGAAG314300.017.8747223
GATGAAA451850.017.8687211
TGGGCGT298100.017.8608071
CCGGGAT354450.017.8602161
ACGAGGA321950.017.854981
GGGCATC346850.017.8074551
GGGACCT359400.017.775651
CGCTGGA393900.017.696651
ACGGAGA599950.017.6658081
TGCGGGT359650.017.6214541
GAAGCAG502200.017.5889431
CGGAGCT324450.017.4276081
CGGGACG209500.017.4037882
Produced by FastQC (version 0.11.5)