FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005767023

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005767023
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1309862
Sequences flagged as poor quality0
Sequence length150
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGCG855.5650275E-542.3529438
TCGGCGG1204.2266495E-430.0000029
TATCGGC1255.367752E-428.87
TCGTCGC807.637138E-616.215-19
CGTCGCT807.637138E-616.215-19
TCCGGCG1006.272923E-512.95999925-29
CTCGTCG1152.3097698E-411.26956615-19
CAGTACC7953.4233017E-610.8679248
CCAGTAC8651.0219842E-49.1560697
AGTACCT9201.996723E-48.6086969
CCGTAAA1600.0047355328.135-39
AGACCTC11201.944443E-47.71428541
ACCGTAA1900.0025971317.578947535-39
TCCAGTA11402.3857132E-47.5789476
GACCTCC11402.3857132E-47.5789472
CTCCAGT16000.00170498145.855
TTCACCG4703.5402794E-55.514893535-39
TCCTCGT3450.0041719735.426086415-19
CCTCCAG21300.00168442965.0704224
Produced by FastQC (version 0.11.5)