FastQCFastQC Report
Wed 8 May 2024
EGAF00005774365

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005774365
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2664258
Total Bases173.1 Mbp
Sequences flagged as poor quality0
Sequence length65
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCTAACGAATCTCGTAT517751.94331780180448TruSeq Adapter, Index 6 (97% over 38bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGCTAACGAATCTCGTATG93910.3524808783533727TruSeq Adapter, Index 6 (97% over 37bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)