FastQCFastQC Report
Thu 16 May 2024
EGAF00005776667

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005776667
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences86847021
Total Bases8.7 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTGTGTTTGAGGGGGTGATCTAAAACACTCTTTACGCCGGCTTCTATT1696740.19537112274697366No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1134780.1306642400549352No Hit
TGTGTTTGAGGGGGTGATCTAAAACACTCTTTACGCCGGCTTCTATTGAC1075700.1238614736134703No Hit
TTGTGTTTGAGGGGGTGATCTAAAACACTCTTTACGCCGGCTTCTATTGA1041070.11987400235639631No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)