FastQCFastQC Report
Thu 16 May 2024
EGAF00005776668

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005776668
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences86847021
Total Bases8.7 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTGTGTTTGAGGGGGTGATCTAAAACACTCTTTACGCCGGCTTCTATT1968690.22668480476722397No Hit
TTGTGTTTGAGGGGGTGATCTAAAACACTCTTTACGCCGGCTTCTATTGA1050800.12099436318028688No Hit
TGTGTTTGAGGGGGTGATCTAAAACACTCTTTACGCCGGCTTCTATTGAC1011330.11644959013620051No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1000840.11524171911434936No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)