FastQCFastQC Report
Thu 16 May 2024
EGAF00005776702

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005776702
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences76350776
Total Bases7.6 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTACCTATAAATCTTCCCACTATTTTGCTACATAGACGGGTGTGCTCT1126220.14750603189678124No Hit
AACCAGCTATCACCAGGCTCGGTAGGTTTGTCGCCTCTACCTATAAATCT965980.12651868790436394No Hit
AAGGGGATTTAGAGGGTTCTGTGGGCAAATTTAAAGTTGAACTAAGATTC964090.12627114621598606No Hit
TATCACCAGGCTCGGTAGGTTTGTCGCCTCTACCTATAAATCTTCCCACT947700.1241244751723283No Hit
AGAGGGTTCTGTGGGCAAATTTAAAGTTGAACTAAGATTCTATCTTGGAC923950.12101383226281813No Hit
AAATTTAAAGTTGAACTAAGATTCTATCTTGGACAACCAGCTATCACCAG920910.12061566997040082No Hit
AAAGTTATTTCTAGTTAATTCATTATGCGGAAGGTATAGGGGTTAGTCCT908770.11902564028949753No Hit
ATCTTGGACAACCAGCTATCACCAGGCTCGGTAGGTTTGTCGCCTCTACC885500.11597786511036903No Hit
GGTAGGTTTGTCGCCTCTACCTATAAATCTTCCCACTATTTTGCTACATA884030.11578533268607513No Hit
CAAAGTTATTTCTAGTTAATTCATTATGCGGAAGGTATAGGGGTTAGTCC850630.1114107864470166No Hit
TATCTTGGACAACCAGCTATCACCAGGCTCGGTAGGTTTGTCGCCTCTAC830260.10874283713894407No Hit
CTTGGACAACCAGCTATCACCAGGCTCGGTAGGTTTGTCGCCTCTACCTA817220.10703493046357512No Hit
TGGGCAAATTTAAAGTTGAACTAAGATTCTATCTTGGACAACCAGCTATC810900.10620717201354968No Hit
TAGAGGGTTCTGTGGGCAAATTTAAAGTTGAACTAAGATTCTATCTTGGA808320.10586925796274814No Hit
CAGCTATCACCAGGCTCGGTAGGTTTGTCGCCTCTACCTATAAATCTTCC798000.10451760175954204No Hit
CAAATTTAAAGTTGAACTAAGATTCTATCTTGGACAACCAGCTATCACCA793870.10397667732938301No Hit
CAAGGGGATTTAGAGGGTTCTGTGGGCAAATTTAAAGTTGAACTAAGATT789250.10337157542445934No Hit
GGAAGGTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTT789050.10334538053680031No Hit
CCTCTACCTATAAATCTTCCCACTATTTTGCTACATAGACGGGTGTGCTC777160.10178809446547078No Hit
TTTAAAGTTGAACTAAGATTCTATCTTGGACAACCAGCTATCACCAGGCT775610.10158508408611329No Hit
AGCTATCACCAGGCTCGGTAGGTTTGTCGCCTCTACCTATAAATCTTCCC772740.10120918744820616No Hit
AAAGAGCTGTTCCTCTTTGGACTAACAGTTAAATTTACAAGGGGATTTAG771760.1010808324986769No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)