FastQCFastQC Report
Fri 17 May 2024
EGAF00005776712

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005776712
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences173433345
Total Bases17.3 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAGTTATTTCTAGTTAATTCATTATGCAGAAGGTATAGGGGTTAGTCCT2641980.15233402780762834No Hit
CTCTACCTATAAATCTTCCCACTATTTTGCTACATAGACGGGTGTGCTCT2467840.14229328275943706No Hit
AACCAGCTATCACCAGGCTCGGTAGGTTTGTCGCCTCTACCTATAAATCT2332990.1345179613528183No Hit
CAAAGTTATTTCTAGTTAATTCATTATGCAGAAGGTATAGGGGTTAGTCC2330950.1344003369132966No Hit
TATCACCAGGCTCGGTAGGTTTGTCGCCTCTACCTATAAATCTTCCCACT2326670.13415355622645692No Hit
TATCTTGGACAACCAGCTATCACCAGGCTCGGTAGGTTTGTCGCCTCTAC2128630.12273476014661425No Hit
TTATTTCTAGTTAATTCATTATGCAGAAGGTATAGGGGTTAGTCCTTGCT2059030.11872169103352068No Hit
TAGAGGGTTCTGTGGGCAAATTTAAAGTTGAACTAAGATTCTATCTTGGA2041100.11768786446458723No Hit
AAATTTAAAGTTGAACTAAGATTCTATCTTGGACAACCAGCTATCACCAG2025810.11680625775856424No Hit
AAGGGGATTTAGAGGGTTCTGTGGGCAAATTTAAAGTTGAACTAAGATTC1996910.11513991153200673No Hit
TACATAGACGGGTGTGCTCTTTTAGCTGTTCTTAGGTAGCTCGTCTGGTT1982740.11432288294964271No Hit
GGGTGTGCTCTTTTAGCTGTTCTTAGGTAGCTCGTCTGGTTTCGGGGGTC1980870.1142150605467478No Hit
ATCTTGGACAACCAGCTATCACCAGGCTCGGTAGGTTTGTCGCCTCTACC1972470.11373072461930549No Hit
CCTCTACCTATAAATCTTCCCACTATTTTGCTACATAGACGGGTGTGCTC1927410.11113260832281127No Hit
AGAAGGTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTT1913300.11031903928278614No Hit
TATTTCTAGTTAATTCATTATGCAGAAGGTATAGGGGTTAGTCCTTGCTA1906520.10992811099849341No Hit
TCTCCTTGCAAAGTTATTTCTAGTTAATTCATTATGCAGAAGGTATAGGG1887180.10881298518459642No Hit
AGAGGGTTCTGTGGGCAAATTTAAAGTTGAACTAAGATTCTATCTTGGAC1884830.10867748644299052No Hit
TAAGATTCTATCTTGGACAACCAGCTATCACCAGGCTCGGTAGGTTTGTC1881620.10849240092786079No Hit
TACCTATAAATCTTCCCACTATTTTGCTACATAGACGGGTGTGCTCTTTT1869270.1077803117964426No Hit
GTCTGGTTTCGGGGGTCTTAGCTTTGGCTCTCCTTGCAAAGTTATTTCTA1867010.10765000236834504No Hit
CAGCTATCACCAGGCTCGGTAGGTTTGTCGCCTCTACCTATAAATCTTCC1849180.1066219417033097No Hit
CTTGGACAACCAGCTATCACCAGGCTCGGTAGGTTTGTCGCCTCTACCTA1846790.10648413660014457No Hit
TATTTTGCTACATAGACGGGTGTGCTCTTTTAGCTGTTCTTAGGTAGCTC1821930.1050507328910712No Hit
AAGTTATTTCTAGTTAATTCATTATGCAGAAGGTATAGGGGTTAGTCCTT1815180.10466153437794791No Hit
AAAGTTGAACTAAGATTCTATCTTGGACAACCAGCTATCACCAGGCTCGG1813490.10456409060206961No Hit
TGGGCAAATTTAAAGTTGAACTAAGATTCTATCTTGGACAACCAGCTATC1801100.1038496951090922No Hit
GCCTCTACCTATAAATCTTCCCACTATTTTGCTACATAGACGGGTGTGCT1782540.10277954334560059No Hit
CTATAAATCTTCCCACTATTTTGCTACATAGACGGGTGTGCTCTTTTAGC1763180.10166326435092397No Hit
AGACGGGTGTGCTCTTTTAGCTGTTCTTAGGTAGCTCGTCTGGTTTCGGG1758900.10141648366408432No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)