FastQCFastQC Report
Thu 16 May 2024
EGAF00005776731

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005776731
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences109848492
Total Bases8.3 Gbp
Sequences flagged as poor quality0
Sequence length51-76
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1475320.13430498435973068No Hit
TGTTTGAGTCCTGTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGA1249930.11378672362657469No Hit
ACTTTGTGTTTGAGGGGGTGATCTAAAACACTCTTTACGCCGGCTTCTAT1241860.11305207539854074No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1151330.1048107242109432No Hit
CTTTGTGTTTGAGGGGGTGATCTAAAACACTCTTTACGCCGGCTTCTATT1145360.10426724838425638No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)