FastQCFastQC Report
Thu 16 May 2024
EGAF00005776732

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005776732
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences109848492
Total Bases8.2 Gbp
Sequences flagged as poor quality0
Sequence length35-76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8004250.7286627111822345No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1356200.1234609574795073No Hit
CTTTGTGTTTGAGGGGGTGATCTAAAACACTCTTTACGCCGGCTTCTATT1329100.12099392315736114No Hit
ACTTTGTGTTTGAGGGGGTGATCTAAAACACTCTTTACGCCGGCTTCTAT1305140.11881273709246733No Hit
TGTTTGAGTCCTGTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGA1234920.11242029612932693No Hit
CTTTGTGTTTGAGTCCTGTATTGTTATTTTTCGTCACTACCTCCCCGGGT1112890.10131135892152256No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)