FastQCFastQC Report
Sun 12 May 2024
EGAF00005776760

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005776760
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67083043
Total Bases6.7 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGCCTCTATGTGTAGATC705710.10519946150922223Illumina Single End Sequencing Primer (100% over 33bp)
AAAGTTATTTCTAGTTAATTCATTATGCAGAAGGTATAGGGGTTAGTCCT698290.10409336976559039No Hit
CTCTACCTATAAATCTTCCCACTATTTTGCTACATAGACGGGTGTGCTCT678740.10117907143836631No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)